Bioconductor Alternative Splicing

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2.7k

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sgseq splicing alternative splicing

updated 8.2 years ago by Leonard Goldstein ▴ 220 • written 8.2 years ago by vakul.mohanty ▴ 20

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1.1k

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aspli readCounts rna-seq alternative splicing AS

5.3 years ago fernandalpcosta ▴ 10

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897

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sgseq alternative splicing rna seq

updated 4.5 years ago by Leonard Goldstein ▴ 220 • written 4.5 years ago by 116100016 • 0

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1.2k

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limma voom alternative splicing

8.2 years ago osa.zuta ▴ 40

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1.2k

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maser R rMATs alternative splicing

5.7 years ago Reza • 0

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1.5k

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rna-seq alternative splicing SGSeq

5.6 years ago • updated 5.5 years ago andrea.bast • 0

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959

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rnaseq alternative splicing ASpli

5.5 years ago nicolas.guyon2 • 0

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900

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R alternative splicing ASpli AsDiscover

5.4 years ago abdul rawoof ▴ 60

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786

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rna seq SGSeq Alternative splicing

updated 4.6 years ago by Leonard Goldstein ▴ 220 • written 4.6 years ago by 116100016 • 0

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1.9k

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dexseq alternative splicing exon skipping

updated 9.2 years ago by Simon Anders ★ 3.7k • written 9.2 years ago by ebadr • 0

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697

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.6 years ago noahhelton98 ▴ 20

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2.2k

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

8.6 years ago Fahmi Nazarie • 0

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1.1k

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deseq2 dexseq alternative splicing

updated 8.5 years ago by Michael Love 42k • written 8.5 years ago by sahiilseth • 0

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1.3k

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limma rna-seq alternative splicing

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by lirongrossmann ▴ 80

14 results • Page 1 of 1

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Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80

ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …

Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0

> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…

Votes

Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180